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Introduction to Materials Studio Training Manual

Version 2008 COPYRIGHT:

Copyright ?2008, Accelrys Software Inc. All rights reserved.

This product (software and/or documentation is furnished under a License Agreement and may be used only in accordance with the terms of such agreement.

TRADEMARK:

The registered trademarks or trademarks of Accelrys Software Inc. include but are not limited to: ACCELRYS?, ACCELRYS & Logo?, ACCELRYS SCIENTIFIC BUSINESS INTELLIGENCE, ACCORD, BIOSYM, CAN, COMPUTER AIDED NANODESIGN?, COMPUTER AIDED NANOTECHNOLOGY, CATALYST?, CERIUS?, CERIUS2?, CHARMM?, CHEMEXPLORER?, CNX, DIAMOND DISCOVERY, DISCOVER?, DISCOVERY STUDIO?, DIVA?, FLEXSERVICES?, GCG?, INSIGHT II?, INSIGHT?, MACVECTOR, MATERIALS STUDIO?, MSI Logo, QUANTA, SCIENTIFIC BUSINESS INTELLIGENCE, SCITEGIC?, , SEQFOLD?, SEQLAB?, SEQWEB?, TOPKAT?, TSAR?, WEBKIT, WISCONSIN PACKAGE, X-PLOR?. All other trademarks are the property of their respective owners.

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This is a “commercial” product. Use, release, duplication, or disclosure by the United States Government agencies is subject to restrictions set forth in DFARS 252.227-7013 or FAR 52.227-19, as applicable, and any successor rules and regulations.

Acknowledgments and References

To print photographs or files of computational results (figures and/or data obtained using Accelrys software; acknowledge the source in an appropriate format. For example:

\Inc. Dynamics calculations performed with the CHARMm forcefield in Discovery Studio, homology models generated using MODELER, and graphical displays generated with the Discovery Studio Visualizer.\

To reference an Accelrys Software Inc. publication in another publication, Accelrys Software Inc. is the author and the publisher. For example:

Accelrys Software Inc., Discovery Studio Modeling Environment, Release x.x, San Diego: Accelrys

Software Inc., 2007.

Request for Permission to Reprint and Acknowledgment

Accelrys may grant permission to republish or reprint its copyrighted materials. Requests should be submitted to Accelrys Scientific Support, either through electronic mail to support-us@accelrys.com, or in writing to:

Accelrys Scientific & Technical Support 10188 Telesis Court, Suite 100 San Diego, CA 92121

Please include an acknowledgement \Software Inc., Document name, Month Year, Accelrys Software Inc., San Diego.\example:

Reprinted with permission from Accelrys Software Inc., Discovery Studio User Guide, June 2007, Accelrys Software Inc., San Diego.

Product Roadmap Disclaimer

This presentation and/or any related documents contains statements regarding our plans or expectations for future features, enhancements or functionalities of current or future products (collectively \change at any time at our discretion. Accordingly, Accelrys is making no representation,

undertaking no commitment or legal obligation to create, develop or license any product or Enhancements. The presentation, documents or any related statements are not intended to, nor shall, create any legal obligation upon Accelrys, and shall not be relied upon in purchasing any product. Any such obligation shall only result from a written agreement executed by both parties. In addition, information disclosed in this presentation and related documents, whether oral or written, is confidential or proprietary information of Accelrys. It shall be used only for the purpose of furthering our business relationship, and shall not be disclosed to third parties.

Introduction to Materials Studio Copyright ?2008, Accelrys Software Inc. All rights reserved.

INTRO 1

Copyright ?2008, Accelrys Software Inc. All rights reserved. Part I: What is Materials Studio? (Demo